Queen Elizabeth II left Malta this afternoon at the end of her two-day State visit that coincided with the hosting of the Commonwealth Heads of Government Meeting.

The Queen had a very busy morning of activities. She and the Duke of Edinburgh have visited Heritage Malta, Kalkara, where they observed restoration work of historically significant paintings, books and textiles and watched a display of Maltese culture.

In a short address released by the British Monarchy, the Queen said that "Malta is always very special for me.

"I remember happy days here with Prince Philip when we were first married, and the wonderful official visits over the past sixty years.

"Since my first experience of Malta in 1949 as a young woman, I have seen this country evolve into a strong nation which plays an important role on the world stage. When Prince Philip and I returned in November 2007 at the time of our Diamond Wedding Anniversary, we could not help but be impressed by the progress and the sense of optimism.

"At the same time you have retained your unique character and powerful national identity. With each visit here I am reminded why Malta was awarded the George Cross in 1942 by my father, King George VI, for her valour – the first and only time it has been awarded to a country rather than an individual.

"Here today we have seen fine examples of your valiant past being preserved and your preparation for the future. I have no doubt that Malta will continue to thrive with its cultural diversity and historical perspective, coupled with a modern outlook.

"I thank you sincerely for being such attentive hosts these past few days and for welcoming Prince Philip and me, once again, so warmly."

The Queen and the Duke then departed by boat to cross Valletta Harbour for the final engagement of the State visit at Marsa Racecourse, home to Malta Racing Club and Malta Polo Club.

The harbour trip was close to being cancelled because of the bad weather but the conditions improved significantly overnight and the trip took place as planned.

A Luzzu carrying the Queen and Prince Philip left Kalkara Creek and headed towards HMS Bulwark - the Royal Navy's flagship - which is currently berthed at Pinto Wharf. A 21-gun salute was fired from the Upper Barrakka Gardens and Royal Navy sailors lining the deck of the British warship gave the Queen three cheers as she sailed by. 

Security in the Grand Harbour was tight, with no less than eight AFM vessels patrolling its waters, a helicopter flying overhead and snipers positioned in several places. 

Video: Matthew Agius, Photos: Melvin Degiorgio.